Information for 5-CAACAGGGCC (Motif 29)

A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C A C G T A C T G A C G T A C G T A C T G
p-value:1e-3
log p-value:-8.151e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 0.0bp
Average Position of motif in Background11.4 +/- 5.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAACAGGGCC--
CAAGATGGCGGC
 A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CAACAGGGCC
ATGCAACAGGTGG
 A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAACAGGGCC--
GAGCAACAGGTGGTT
 A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAACAGGGCC
CACAGCAGGGGG
 A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAACAGGGCC--
CAAGATGGCGGC
 A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAACAGGGCC
-CACAGN---
 A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CAACAGGGCC-
---CTAGGCCT
 A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T
A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAACAGGGCC--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAACAGGGCC---
---CAAGGHCANV
 A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAACAGGGCC
DCTCAGCAGG---
 A C G T A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C T G A C T G A C T G A G T C A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T