Information for 6-AGGAGGGMGCSCY (Motif 5)

T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
Reverse Opposite:
T C G A A C T G T A C G A T C G G A T C A C T G G A T C A G T C G A T C A G C T A T G C A G T C A G C T
p-value:1e-13
log p-value:-3.171e+01
Information Content per bp:1.705
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.35%
Number of Background Sequences with motif389.9
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets46.7 +/- 26.3bp
Average Position of motif in Background50.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGGAGGGMGCSCY---
TTGGGGGCGCCCCTAG
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGAGGGMGCSCY--
ATAAGGGCGCGCGAT
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T A C G T A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGGGMGCSCY----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0008.1_E2F2_1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGAGGGMGCSCY--
ATAAAGGCGCGCGAT
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGGGMGCSCY
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGGAGGGMGCSCY
GGGAGGACNG---
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGGAGGGMGCSCY
CACAGCAGGGGG----
 A C G T A C G T A C G T T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGGAGGGMGCSCY
-GGGGGGGG----
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
A C G T C T A G A C T G C T A G T C A G T C A G T A C G C T A G A C T G A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGGAGGGMGCSCY
-GGGGGAATCCCC
 T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGGGMGCSCY-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T T C G A A C T G A T C G C T G A C A T G C T A G C T A G T G A C C T A G A T G C A T G C G T A C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A