Information for 5-CCTTTACTGC (Motif 9)

G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A T C A G A G C T C G T A C T G A C G T A C T A G C A T G
p-value:1e-9
log p-value:-2.260e+01
Information Content per bp:1.843
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif180.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets47.8 +/- 28.9bp
Average Position of motif in Background48.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCTTTACTGC--
-TTTTATGGCTN
 G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCTTTACTGC-
DGWTTTATGRCN
 A C G T G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTACTGC-----
TCNCTTTACAGCGNNNT
 A C G T A C G T G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTTTACTGC
-TTTTATTGC
 G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCTTTACTGC
TTTTTATTGC
 G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTACTGC-----
TCNNTTTACAGCGNNNT
 A C G T A C G T G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCTTTACTGC-----
TCNNTTTACAGCGNNNT
 A C G T A C G T G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTTTACTGC-
NTTTTATTACN
 G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTTTACTGC-
-TTTAATTGCN
 G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTTTACTGC----
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T G T A C A G T C A C G T A G C T G C A T T C G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T