Information for 9-TTAAATTCTTWAA (Motif 6)

C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A
Reverse Opposite:
C G A T C G A T C G T A G C T A C G T A C T A G G C T A C G T A G A C T C G A T C A G T C G T A G C T A
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.653
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.11%
Number of Background Sequences with motif528.0
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets44.9 +/- 26.5bp
Average Position of motif in Background48.9 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0112.1_Nkx2-3/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTAAATTCTTWAA-
CNTTAAGTACTTAANG
 A C G T A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTAAATTCTTWAA--
AATCAATTCAATAATT
 A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTAAATTCTTWAA----
-TAAAGTCGTAAAACAT
 C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTAAATTCTTWAA--
TTTTAAGTACTTAAATT
 A C G T A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PH0149.1_Pou3f4/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTAAATTCTTWAA---
AATTAATTAATTAATTC
 A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTAAATTCTTWAA
NNATNAATTGTTTNN
 A C G T A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TTAAATTCTTWAA----
-TAAAGTCGTAAAATAG
 C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTAAATTCTTWAA---
CAAAATCAATTAATTT
 C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T A C G T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

PH0146.1_Pou3f1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTAAATTCTTWAA---
AATTAATTAATTAATTC
 A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T A C G T
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTAAATTCTTWAA--
TACTAAGTACTTAAATG
 A C G T A C G T C G A T C G A T G T C A C G T A C T G A C G A T C G A T G A T C G C A T C G A T G C A T G C T A C G T A A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G