Information for 11-CACCTCTTGATGG (Motif 10)

A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C G T A G T C C G T A C G T A A T C G C G T A A C T G C T A G A C G T C T A G
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 23.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT1/MA0743.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CACCTCTTGATGG
ANCCACCTGTTGCNC-
 A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACCTCTTGATGG
CCACCTGTTGCAT-
 A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CACCTCTTGATGG--
-----GTTAATGGCC
 A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PH0134.1_Pbx1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACCTCTTGATGG----
NNNNNATTGATGNGTGN
 A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CACCTCTTGATGG-
------TTGATTGN
 A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------CACCTCTTGATGG
NNTNCGCACCTGTNGAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CACCTCTTGATGG--
GCAACCTCATTATNNNN
 A C G T A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

FIGLA/MA0820.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACCTCTTGATGG
ACCACCTGTT-----
 A C G T A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CACCTCTTGATGG
NCACCTGTN-----
 A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CACCTCTTGATGG
CNGACACCTGTTCNNN-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T A T G C A C G T A C G T A C T G C G T A A C G T A C T G A C T G
T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C A C G T