Information for 8-GCACGCAGAG (Motif 14)

T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C G C A T T G A C C G A T A C T G A G T C A C T G C G A T A T C G A T G C
p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.833
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif149.1
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets51.3 +/- 25.7bp
Average Position of motif in Background47.6 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GCACGCAGAG
TBGCACGCAA--
 A C G T A C G T T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GCACGCAGAG
-CACGCA---
 T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCACGCAGAG-
-CCTGCTGAGH
 T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCACGCAGAG---
GCCGCGCAGTGCGT
 A C G T T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCACGCAGAG
GCACGTNC--
 T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCACGCAGAG
BGCACGTA---
 A C G T T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCACGCAGAG
GCACGTAY--
 T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCACGCAGAG
GGCACGCGTC-
 A C G T T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCACGCAGAG
GCACGTACCC
 T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCACGCAGAG---
NNTCCTGCTGTGNNN
 A C G T A C G T T A C G A T G C G C T A G T A C C T A G G T A C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C