Information for 24-ACGGGAGAGATCA (Motif 22)

C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G T C A C G T A G T C A C G T A G T C A G T C A G T C A C T G A C G T
p-value:1e-3
log p-value:-8.338e+00
Information Content per bp:1.530
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif20.16%
Number of Background Sequences with motif7283.3
Percentage of Background Sequences with motif15.37%
Average Position of motif in Targets49.7 +/- 27.9bp
Average Position of motif in Background49.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0126.1_Gata5_2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACGGGAGAGATCA----
GACAGAGATATCAGTGT
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ACGGGAGAGATCA-----
-AAGGCGAAATCATCGCA
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACGGGAGAGATCA
TAGGGCAAAGGTCA
 A C G T C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACGGGAGAGATCA-----
-GGCGAGGGGTCAAGGGC
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ACGGGAGAGATCA
-----AGRGGTCA
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACGGGAGAGATCA
GTAGGGCAAAGGTCA
 A C G T A C G T C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----ACGGGAGAGATCA
NNNACCGAGAGTNNN--
 A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ACGGGAGAGATCA----
-----AAAGATCAAAGG
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ACGGGAGAGATCA
GAGGTCAAAGGTCA
 A C G T C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

LEF1/MA0768.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:ACGGGAGAGATCA-------
-----AAAGATCAAAGGGTT
 C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T