Information for 3-SGGCYTGCGGTKGCCC (Motif 6)

A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
Reverse Opposite:
A T C G A C T G A C T G T G A C G T C A G T C A A T G C T A G C C T A G A T G C T C G A C T A G A C T G T A G C A G T C T A G C
p-value:1e-9
log p-value:-2.292e+01
Information Content per bp:1.731
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif62.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets41.8 +/- 24.1bp
Average Position of motif in Background48.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX2/MA0511.2/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:SGGCYTGCGGTKGCCC
----TTGCGGTTT---
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
A C G T A C G T A C G T A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:SGGCYTGCGGTKGCCC
-GGCGCGCT-------
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-SGGCYTGCGGTKGCCC-
BTGACCTCTNNHTGACCY
 A C G T A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.52
Offset:6
Orientation:forward strand
Alignment:SGGCYTGCGGTKGCCC------
------GGGTGTGCCCAAAAGG
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:SGGCYTGCGGTKGCCC---
TGACCTAAAGTAACCTCTG
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.51
Offset:4
Orientation:forward strand
Alignment:SGGCYTGCGGTKGCCC----
----TTGGGGGCGCCCCTAG
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:SGGCYTGCGGTKGCCC
---CCTGCTGAGH---
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.50
Offset:-7
Orientation:forward strand
Alignment:-------SGGCYTGCGGTKGCCC
GGGGCCGAGGCCTG---------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:SGGCYTGCGGTKGCCC
----CTGCGCATGCGC
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
A C G T A C G T A C G T A C G T A T G C A G C T T C A G T G A C T C A G A T G C T G C A A C G T A T C G G A T C A C T G A G T C

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:SGGCYTGCGGTKGCCC
NNTCCTGCTGTGNNN-
 A T C G A C T G A C T G A G T C A G T C A G C T A T C G A G T C A T C G A T C G A C G T A C G T A C T G T A G C A G T C A T G C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T