Information for 12-GTCTGTAGGTGAAGGA (Motif 21)

A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
Reverse Opposite:
C A G T A G T C A G T C A G C T A C G T A G T C G T C A A G T C A G T C C G A T G T C A G T A C C G T A A C T G C G T A A G T C
p-value:1e-6
log p-value:-1.603e+01
Information Content per bp:1.913
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets28.6 +/- 17.6bp
Average Position of motif in Background47.1 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTCTGTAGGTGAAGGA
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GTCTGTAGGTGAAGGA--
------AGGTCAAGGTCA
 A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GTCTGTAGGTGAAGGA--
------AGGTCAAGGTCA
 A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCTGTAGGTGAAGGA
VBSYGTCTGG----------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGTAGGTGAAGGA
NNTNNTGTCTGGNNTNG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTAGGTGAAGGA
CTGTCTGG----------
 A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GTCTGTAGGTGAAGGA--
------TGGGGAAGGGCM
 A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

RARA/MA0729.1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GTCTGTAGGTGAAGGA
GAGGTCAAAAGGTCAATG-
 A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GTCTGTAGGTGAAGGA
GTAGGTCACTGGGTCA----
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GTCTGTAGGTGAAGGA
TWGTCTGV----------
 A C G T A C G T A C T G A C G T A G T C C G A T A C T G A C G T C G T A C T A G A C T G A C G T A C T G C G T A C T G A A C T G A C T G G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T