Information for 7-CVCAGTGTCTGCC (Motif 14)

A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C
Reverse Opposite:
A C T G A C T G A T G C C T G A A T C G C G T A A G T C G T C A A G T C A G C T A T C G A C G T C T A G
p-value:1e-8
log p-value:-2.004e+01
Information Content per bp:1.760
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif48.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets64.6 +/- 24.0bp
Average Position of motif in Background54.4 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CVCAGTGTCTGCC---
NNGCGTGTGTGCNGCN
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CVCAGTGTCTGCC----
-----TGTCTGDCACCT
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CVCAGTGTCTGCC
NNNNTGCCAGTGATTG--
 A C G T A C G T A C G T A C G T A C G T A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CVCAGTGTCTGCC
--VBSYGTCTGG-
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CVCAGTGTCTGCC----
----CTGTCTGTCACCT
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

HINFP/MA0131.2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CVCAGTGTCTGCC-
--CAACGTCCGCGG
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T
A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CVCAGTGTCTGCC
----CTGTCTGG-
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CVCAGTGTCTGCC----
--------CTGCCCGCA
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CVCAGTGTCTGCC
TTRAGTGSYK---
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CVCAGTGTCTGCC--
---RGTTAGTGCCCY
 A G T C T G C A A T G C C T G A A C T G A C G T T A C G G C A T A T G C A G C T A T C G G T A C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T