Information for 1-YTSCCCCTGCTKGSSR (Motif 1)

A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
Reverse Opposite:
G A C T A T C G A T C G A G T C G T A C C G T A A T C G A G T C C G T A A C T G A C T G A C T G A C T G A T C G G T C A C T G A
p-value:1e-15
log p-value:-3.629e+01
Information Content per bp:1.841
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 21.4bp
Average Position of motif in Background72.5 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:YTSCCCCTGCTKGSSR
--CCCCCTGCTGTG--
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---YTSCCCCTGCTKGSSR
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------YTSCCCCTGCTKGSSR
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YTSCCCCTGCTKGSSR
GGCCYCCTGCTGDGH-
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----YTSCCCCTGCTKGSSR
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:YTSCCCCTGCTKGSSR
TTCCCCCTAC------
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YTSCCCCTGCTKGSSR-
--TCNCCTGCTGNGNNN
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YTSCCCCTGCTKGSSR
SNGCACCTGCHS----
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YTSCCCCTGCTKGSSR
GACCCCCCGCTGTG--
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YTSCCCCTGCTKGSSR
GACCCCCCGCTGCGC-
 A G C T A C G T A T G C A G T C A G T C A G T C A G T C A C G T A C T G A T G C A C G T A C T G A C T G A T G C A T G C C T G A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T