Information for 1-RSCCCACGGGGMK (Motif 3)

C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
Reverse Opposite:
G T A C A C T G A T G C A G T C A G T C A G T C A C T G A C G T A C T G A C T G A C T G A T C G A G T C
p-value:1e-12
log p-value:-2.853e+01
Information Content per bp:1.872
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 19.4bp
Average Position of motif in Background54.3 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0102.1_Zic2_1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RSCCCACGGGGMK--
CCCCCCCGGGGGGGT
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RSCCCACGGGGMK-
NCCCCCCCGGGGGGN
 A C G T C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RSCCCACGGGGMK
TGCCCTGAGGGCA
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RSCCCACGGGGMK
TGCCCNNAGGGCA
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:RSCCCACGGGGMK
---CCACGTGGNN
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
A C G T A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RSCCCACGGGGMK
CACCCCCGGGGGGG
 A C G T C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RSCCCACGGGGMK
GTCCCCAGGGGA--
 A C G T C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RSCCCACGGGGMK
TGCCCTNAGGGCA
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

PLAG1/MA0163.1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RSCCCACGGGGMK
GGGGCCCAAGGGGG-
 A C G T A C G T C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:RSCCCACGGGGMK
---CCACGTGGNN
 C T A G T A G C A G T C A G T C A G T C C G T A G T A C A C T G A C T G A C T G A T C G T G A C A C T G
A C G T A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C