Information for 3-AGGCMTTGGAGCCAAT (Motif 14)

C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T
Reverse Opposite:
C T G A A C G T A C G T A C T G A C T G G T A C A G C T T A G C A T G C C G T A C G T A C A G T A C T G A G T C G T A C A C G T
p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.746
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 25.7bp
Average Position of motif in Background35.7 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:9
Orientation:forward strand
Alignment:AGGCMTTGGAGCCAAT---
---------AGCCAATCGG
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AGGCMTTGGAGCCAAT--
------ACTAGCCAATCA
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGGCMTTGGAGCCAAT--
---ATTTGCATACAATGG
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Sox17/MA0078.1/Jaspar

Match Rank:4
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:AGGCMTTGGAGCCAAT---
----------GACAATGNN
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGCMTTGGAGCCAAT---
----AAATGGACCAATCAG
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:AGGCMTTGGAGCCAAT
---------TGCCAA-
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

E2F1/MA0024.3/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGGCMTTGGAGCCAAT
----TTTGGCGCCAAA
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:AGGCMTTGGAGCCAAT
-------CGTGCCAAG
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:AGGCMTTGGAGCCAAT-----
------CTCACACAATGGCGC
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGGCMTTGGAGCCAAT
-------BCAGACWA-
 C G T A A C T G T A C G G T A C G T C A C G A T A C G T A T C G A C T G C T G A A C T G G T A C A G T C G T C A C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T