Information for 6-CCACAGCTCATCA (Motif 12)

A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A C G A T A C T G C G T A A T C G A G T C A C G T A C T G A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.5 +/- 28.0bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGCTCATCA
AAACCACAGC------
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCACAGCTCATCA
-CACAGN------
 A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCACAGCTCATCA
NWAACCACADNN-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCACAGCTCATCA
AAACCACAGAN-----
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCACAGCTCATCA-
TCTCAAAGGTCACCTG
 A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCACAGCTCATCA
NAAACCACAG-------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCACAGCTCATCA
AAACCACANN------
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP4/MA0691.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCACAGCTCATCA
-AACAGCTGAT--
 A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
A C G T T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCACAGCTCATCA
-CAAAGGTCAG--
 A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCACAGCTCATCA
--ACAGCTGTTV-
 A G T C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A G T C C G T A A G C T A G T C C G T A
A C G T A C G T T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A A C G T