Information for 1-GCCCMSAAGGCCAAGA (Motif 1)

A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
Reverse Opposite:
G A C T A G T C A C G T A C G T A T C G A C T G A T G C A G T C A C G T A C G T A T G C C A G T C T A G C A T G C T A G A T G C
p-value:1e-13
log p-value:-3.028e+01
Information Content per bp:1.777
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 16.8bp
Average Position of motif in Background74.8 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.70
Offset:5
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
-----CAAGGHCANV-
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
---NTCAAGGTCA---
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
---BTCAAGGTCA---
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
----TCAAGGTCAT--
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCCCMSAAGGCCAAGA
----TCAAGGTCAN--
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
------AAGGTCAC--
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA--
-TATTCAAGGTCATGCGA
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A A C G T A C G T
A C G T C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA
----TCAAGGTCATA-
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCCMSAAGGCCAAGA
TGCCCTGAGGGCA----
 A C G T A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.58
Offset:7
Orientation:forward strand
Alignment:GCCCMSAAGGCCAAGA---
-------AGGTCAAGGTCA
 A T C G A G T C G A T C A G T C G T C A A T C G C G T A C G T A A C T G A T C G G T A C A T G C C G T A C G T A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A