Information for 13-YCAGCACTGCAGG (Motif 20)

A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
Reverse Opposite:
G A T C G T A C C G A T A T C G A G T C C G T A A C T G C G A T A C T G A T G C C G A T A C T G C T G A
p-value:1e-9
log p-value:-2.153e+01
Information Content per bp:1.833
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif38.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets26.0 +/- 15.3bp
Average Position of motif in Background39.9 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-YCAGCACTGCAGG---
AATCGCACTGCATTCCG
 A C G T A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----YCAGCACTGCAGG
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:YCAGCACTGCAGG---
-GAGCACAGCAGGACA
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:YCAGCACTGCAGG
--RSCACTYRAG-
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:YCAGCACTGCAGG---
-CCACACAGCAGGAGA
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:YCAGCACTGCAGG-----
---DCHCAGCAGGRGGCC
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YCAGCACTGCAGG
-AAGCACTTAA--
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:YCAGCACTGCAGG
--NSCACTYVAV-
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----YCAGCACTGCAGG
TGAGTCAGCA-------
 A C G T A C G T A C G T A C G T A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YCAGCACTGCAGG---
----CACAGCAGGGGG
 A G C T G T A C C G T A A T C G A G T C C G T A A G T C A C G T C T A G A T G C C G T A A C T G C A T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G