Information for 5-ATSTGATTAGTGS (Motif 7)

C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
Reverse Opposite:
A T C G A G T C C G T A G A T C A C G T C G T A C G T A C A G T G T A C C G T A T A G C C G T A G A C T
p-value:1e-14
log p-value:-3.378e+01
Information Content per bp:1.643
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.38%
Number of Background Sequences with motif509.4
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets41.4 +/- 21.5bp
Average Position of motif in Background52.4 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:ATSTGATTAGTGS
---TGATTGATGA
 C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ATSTGATTAGTGS--
---TGATTRATGGCY
 C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:ATSTGATTAGTGS-
---TGATTTATGGC
 C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATSTGATTAGTGS
TAATTGATTA----
 A C G T C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T A C G T A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATSTGATTAGTGS
GTAATCDGATTA----
 A C G T A C G T A C G T C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATSTGATTAGTGS-
--ATGATKGATGRC
 C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATSTGATTAGTGS
-TTTGATTGATGN
 C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Hoxd8/MA0910.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATSTGATTAGTGS---
TAAATAATTAATGGCTA
 A C G T C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C A C G T A C G T A C G T
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

PH0080.1_Hoxd8/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATSTGATTAGTGS---
TAAATAATTAATGGCTA
 A C G T C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C A C G T A C G T A C G T
C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATSTGATTAGTGS
TAATYNRATTAR---
 A C G T A C G T C T G A G C A T A T C G C G A T A C T G G T C A A C G T G C A T T G C A C T A G C G A T A C T G T A G C
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T A C G T A C G T