Information for 23-CCGCTATGAA (Motif 38)

A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A A C G T C G T A A C T G A G T C A C T G A C T G
p-value:1e-6
log p-value:-1.440e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.7 +/- 13.5bp
Average Position of motif in Background60.5 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCGCTATGAA
GTCCGCCATTA-
 A C G T A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCGCTATGAA--
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGCTATGAA-
-NGCAATTAAA
 A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGCTATGAA--
--CCTTTGATGT
 A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCGCTATGAA----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCGCTATGAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCGCTATGAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGCTATGAA---
NNTNTCATGAATGT
 A C G T A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGCTATGAA-
--GCAATAAAA
 A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCGCTATGAA--------
---GTATAAAAGGCGGGG
 A G T C A G T C A C T G A G T C A C G T C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G