Information for 18-RCCACAGGACRGATAT (Motif 25)

C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
Reverse Opposite:
C G T A A C G T G T C A A C G T T A G C A G T C A T C G C A G T A G T C A G T C A C G T A C T G C G A T C A T G A T C G A G T C
p-value:1e-9
log p-value:-2.112e+01
Information Content per bp:1.741
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.5 +/- 19.6bp
Average Position of motif in Background47.0 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RCCACAGGACRGATAT
ATGCAACAGGTGG-----
 A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RCCACAGGACRGATAT
AAACCACAGAN-------
 A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RCCACAGGACRGATAT
GAGCAACAGGTGGTT---
 A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RCCACAGGACRGATAT
--CACAGN--------
 C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RCCACAGGACRGATAT
TCACCTCTGGGCAG----
 A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RCCACAGGACRGATAT
NWAACCACADNN-------
 A C G T A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--RCCACAGGACRGATAT
AAACCACAGC--------
 A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---RCCACAGGACRGATAT
NAAACCACAG---------
 A C G T A C G T A C G T C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RCCACAGGACRGATAT
--AACAGGAAGT----
 C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T
A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:forward strand
Alignment:RCCACAGGACRGATAT-
-----AGGAAACAGCTG
 C T A G T A G C G A T C C G T A A G T C C G T A C T A G A C T G G C T A T A G C C T A G A T C G G T C A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G