Information for 13-AKMSATCAAYATC (Motif 13)

C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C T G A A C G T A C G T A C T G C G T A A C G T A T C G A C T G G T A C A C G T
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.878
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 18.5bp
Average Position of motif in Background66.6 +/- 1.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AKMSATCAAYATC--
TCACCCATCAATAAACA
 A C G T A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AKMSATCAAYATC
HNRAATCAAT---
 C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AKMSATCAAYATC
--DGATCRATAN-
 C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AKMSATCAAYATC--
NNAGATNVNWATCTN
 C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C A C G T A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AKMSATCAAYATC
CCATCAATCAAA---
 A C G T A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AKMSATCAAYATC
GYCATCMATCAT----
 A C G T A C G T A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKMSATCAAYATC
AAAAAATCAATAAT
 A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

ONECUT1/MA0679.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKMSATCAAYATC
AAAAAATCGATAAT
 A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AKMSATCAAYATC
GGCCATTAAC---
 C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

ONECUT2/MA0756.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AKMSATCAAYATC
AAAAAATCGATAAT
 A C G T C G T A A C T G G T A C A T G C C G T A C G A T A G T C C G T A C G T A A G C T C G T A A C G T A G T C
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T