Information for 3-CCGCGCACTCTGCCAG (Motif 5)

A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A C T G G A C T A C T G A T G C A C T G A G T C A C T G A T C G
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 31.6bp
Average Position of motif in Background41.8 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGCGCACTCTGCCAG
CTTGGCANNNTGCCAA
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.58
Offset:9
Orientation:forward strand
Alignment:CCGCGCACTCTGCCAG-
---------TTGCCAAG
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCGCGCACTCTGCCAG-
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C G T
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCGCGCACTCTGCCAG
--TGGCAGNCTGCCAG
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:CCGCGCACTCTGCCAG
----------TGCCAA
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCGCGCACTCTGCCAG
YCCGCCCACGCN-----
 A C G T A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CCGCGCACTCTGCCAG-
--------CGTGCCAAG
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.51
Offset:8
Orientation:forward strand
Alignment:CCGCGCACTCTGCCAG--
--------GGTGCCAAGT
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCGCGCACTCTGCCAG
NCGCGGACGTTG----
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:CCGCGCACTCTGCCAG--
---------CTGCCCGCA
 A T G C A G T C A C T G A G T C A T C G G T A C C T G A A G T C A C G T A G T C A C G T A C T G A G T C A G T C C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A