Information for 5-CCAGACATGACTA (Motif 4)

A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
Reverse Opposite:
C A G T T C G A A C T G G A C T A G T C C G T A A C G T A C T G A C G T A G T C C G A T A C T G A C T G
p-value:1e-18
log p-value:-4.260e+01
Information Content per bp:1.835
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.5 +/- 25.2bp
Average Position of motif in Background54.0 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACATGACTA
CAAATCCAGACATCACA-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACATGACTA
ATGCCAGACN------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCAGACATGACTA
CCAGACAG-----
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGACATGACTA
CCAGACRSVB---
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CCAGACATGACTA
-----CATGAC--
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGACATGACTA----
--AGAAATGACTTCCCT
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGACATGACTA
BCAGACWA-----
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CCAGACATGACTA
----NCGTGACN-
 A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAGACATGACTA
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACATGACTA
TGWCCTCARNTGACC-
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G C G T A G T A C G T C A A C G T T C A G C G T A A G T C A C G T G T C A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T