Information for 14-CCGACAACAA (Motif 19)

G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A C G T A T C G A G C T T G A C C T A G A C T G
p-value:1e-8
log p-value:-1.861e+01
Information Content per bp:1.847
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif51.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets42.4 +/- 21.8bp
Average Position of motif in Background55.8 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCGACAACAA---
ATGTCACAACAACAC
 A C G T A C G T G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CCGACAACAA---
---RNAACAATGG
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CCGACAACAA-
-----AACAAT
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCGACAACAA-----
CAAACAACAACACCT
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0067.1_Sox18_1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAACAA-----
NNTNANAACAATTNNA
 A C G T G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCGACAACAA-
----NAACAAT
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAACAA---
NTTNAGAACAATTA
 A C G T G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCGACAACAA------
-NNNTAACAATTATAN
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCGACAACAA-------
AGAAGAACAAAGGACTA
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGACAACAA-
--GTAAACAAT
 G T A C A G T C A C T G C T G A A T G C G T C A T G C A A G T C C G T A C G T A A C G T
A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T