Information for 5-GGCAAGTCAC (Motif 5)

A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
Reverse Opposite:
A C T G A G C T A T C G C T G A A G T C A C G T A G C T C T A G G T A C A G T C
p-value:1e-16
log p-value:-3.787e+01
Information Content per bp:1.834
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif139.7
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets51.4 +/- 21.6bp
Average Position of motif in Background55.3 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGTCAC
AAGGCAAGTGT-
 A C G T A C G T A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGCAAGTCAC--
----AGTCACGC
 A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

CREB3/MA0638.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGTCAC--
GTGCCACGTCATCA
 A C G T A C G T A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C A C G T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCAAGTCAC
GGAAATTCCC
 A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

HES5/MA0821.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGTCAC-
TGGCACGTGCCG
 A C G T A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C A C G T
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCAAGTCAC
GGAAATCCCC
 A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCAAGTCAC
GGAAATTCCC
 A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

HES7/MA0822.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGTCAC-
TGGCACGTGCCA
 A C G T A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C A C G T
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCAAGTCAC
-AAAAGTCAA
 A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C
A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

XBP1/MA0844.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGCAAGTCAC-
AATGCCACGTCATC
 A C G T A C G T A C G T A C T G A C T G G A T C T C G A G T C A C T A G G A C T A T G C T C G A A G T C A C G T
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C