Information for 3-RCTGTCCMKGGTSCYR (Motif 4)

C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
Reverse Opposite:
A G T C C T G A C T A G A T C G C G T A A G T C A G T C G T C A A C G T A C T G A C T G C G T A A T G C C G T A A C T G A G T C
p-value:1e-18
log p-value:-4.283e+01
Information Content per bp:1.844
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 6.5bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---RCTGTCCMKGGTSCYR--
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---RCTGTCCMKGGTSCYR-
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RCTGTCCMKGGTSCYR
-CTGTTCCTGG-----
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RCTGTCCMKGGTSCYR
GCTGTCAA--------
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RCTGTCCMKGGTSCYR
GCTGTG----------
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RCTGTCCMKGGTSCYR
CCTGTCAA--------
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:RCTGTCCMKGGTSCYR
-CTGACCTTTG-----
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:RCTGTCCMKGGTSCYR
-NTGTCAN--------
 C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----RCTGTCCMKGGTSCYR
NNNCAGCTGTCAATATN----
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----RCTGTCCMKGGTSCYR
AAGCACCTGTCAATAT-----
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C G T A T C G A C G T A G T C A G T C G T C A C A G T A C T G A C T G A C G T A T G C A G T C A G C T C T A G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T A C G T A C G T