Information for 13-CCGACAGCAG (Motif 20)

A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G
Reverse Opposite:
A G T C G A C T A T C G A G T C A G C T A T C G A C G T G T A C A T C G A T C G
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.836
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif164.3
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.4 +/- 24.1bp
Average Position of motif in Background47.0 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf12/MA0521.1/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGACAGCAG---
--AACAGCTGCAG
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

Myog/MA0500.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGACAGCAG---
--GACAGCTGCAG
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCGACAGCAG
--AACAGCTG
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCGACAGCAG---
---NCAGCTGCTG
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Myod1/MA0499.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGACAGCAG--
NGNGACAGCTGCN
 A C G T A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGACAGCAG----
--CACAGCAGGGGG
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGACAGCAG----
--AGCAGCTGCTNN
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCGACAGCAG-
-BAACAGCTGT
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T
A C G T A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CCGACAGCAG---
---HCAGCTGDTN
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCGACAGCAG--
----CAGCTGNT
 A T G C T A G C A C T G G T C A A T G C C T G A T C A G A T G C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T