Information for 10-GAGAAGACACGTGCAG (Motif 18)

A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A G T C G T C A A G T C A C T G A C G T A C T G A C G T A G T C A G C T A C G T A T G C A G C T A T G C
p-value:1e-9
log p-value:-2.147e+01
Information Content per bp:1.840
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.7 +/- 25.2bp
Average Position of motif in Background50.5 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes2/MA0616.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAGAAGACACGTGCAG
-TAACGACACGTGC--
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:2
Score:0.62
Offset:5
Orientation:forward strand
Alignment:GAGAAGACACGTGCAG
-----GACACGTGCC-
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C A C G T

Npas2/MA0626.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAGAAGACACGTGCAG
-----NACACGTGCN-
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GAGAAGACACGTGCAG
------ACACGTGC--
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GAGAAGACACGTGCAG
-----GHCACGTG---
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T

HEY1/MA0823.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GAGAAGACACGTGCAG
-----GACACGTGCC-
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGAAGACACGTGCAG
-----GNCACGTG---
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GAGAAGACACGTGCAG
-------CACGTGBN-
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAGAAGACACGTGCAG
----NGKCACGTGM--
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAGAAGACACGTGCAG
-----GTCACGTGGM-
 A T C G C T G A T A C G C G T A C T G A A C T G T G C A A G T C C G T A A G T C C T A G A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T C A G C A G T A G T C C G T A A T G C T C A G G C A T A C T G A C T G T G A C A C G T