Information for 5-CAGCASCYMTYSATMA (Motif 15)

A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A T G C C T G A C T G A A C G T C T G A A C T G A T G C A C G T C T A G A G T C C G A T A C T G
p-value:1e-8
log p-value:-1.969e+01
Information Content per bp:1.832
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.2 +/- 17.2bp
Average Position of motif in Background12.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGCASCYMTYSATMA
----RGCCATYAATCA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A C G T A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGCASCYMTYSATMA-----
----ACCGGTTGATCACCTGA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

CUX1/MA0754.1/Jaspar

Match Rank:3
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAGCASCYMTYSATMA
------NTATCGATTA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CAGCASCYMTYSATMA-
-----GYCATCMATCAT
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Tcf12/MA0521.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGCASCYMTYSATMA
NNGCAGCTGTT-----
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T

CUX2/MA0755.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CAGCASCYMTYSATMA
------TTATCGATTA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G T A G C A T G A T C T C A G T C G A G A C T G A C T C G T A

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGCASCYMTYSATMA
NNGCAGCTGTC-----
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CAGCASCYMTYSATMA
------TCATCAATCA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CAGCASCYMTYSATMA
-----GCCATAAATCA
 A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAGCASCYMTYSATMA
AGCAGCTGCTNN------
 A C G T A C G T A G T C C G T A C T A G G A T C C G T A A T C G A G T C A G C T T G C A A G C T A G C T T A C G C G T A A C G T G T C A C G T A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T