Information for 4-AAAACCCGGAGCG (Motif 2)

C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
Reverse Opposite:
A G T C C T A G A T G C A G C T A T G C A G T C T C A G C T A G T C A G G A C T A C G T A G C T A G C T
p-value:1e-34
log p-value:-7.999e+01
Information Content per bp:1.766
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif51.1
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets45.6 +/- 21.3bp
Average Position of motif in Background56.0 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:AAAACCCGGAGCG
------CGGAGC-
 C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAAACCCGGAGCG--
AANNATCCGGATGTNN
 A C G T C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G A C G T A C G T
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCGGAGCG--
TCGTACCCGCATCATT
 A C G T C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAAACCCGGAGCG
GGAAANCCCC-----
 A C G T A C G T C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAACCCGGAGCG
TAATCCCN-----
 C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T

ELF1/MA0473.2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AAAACCCGGAGCG-
--AACCCGGAAGTG
 C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G A C G T
A C G T A C G T C G T A G C T A G T A C T A G C G T A C A C T G A C T G C T G A G C T A C T A G G A C T T C A G

PB0162.1_Sfpi1_2/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AAAACCCGGAGCG
CAAATTCCGGAACC
 A C G T C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C

ELF4/MA0641.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAAACCCGGAGCG-
--AACCCGGAAGTG
 C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G A C G T
A C G T A C G T C G T A G C T A G T A C T A G C T G A C C T A G A C T G C G T A G T C A T C A G A G C T C T A G

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AAAACCCGGAGCG
GGAAATTCCC-----
 A C G T A C G T C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AAAACCCGGAGCG-
---ACCCGGATGTA
 C T G A C T G A G T C A C T G A A G T C A G T C A G T C A C T G A T C G C T G A T A C G G A T C T A C G A C G T
A C G T A C G T A C G T C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A