Information for 4-RAATGTACTG (Motif 4)

C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G
Reverse Opposite:
T A G C C G T A A C T G A C G T T C G A A T G C G C T A A G C T C A G T G A T C
p-value:1e-23
log p-value:-5.425e+01
Information Content per bp:1.521
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif8.82%
Number of Background Sequences with motif827.2
Percentage of Background Sequences with motif1.81%
Average Position of motif in Targets50.9 +/- 27.9bp
Average Position of motif in Background50.2 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RAATGTACTG-----
TTCNAAGTACTTNNNNN
 A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0117.1_Nkx3-1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAATGTACTG-----
TACTAAGTACTTAAATG
 A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAATGTACTG-----
TTTTAAGTACTTAAATT
 A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:RAATGTACTG-
---TGACCTYA
 C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RAATGTACTG----
CTTTAAGTACTTAATG
 A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----RAATGTACTG
GRACAGWMTGTYCTB
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RAATGTACTG--
--AAGCACTTAA
 C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----RAATGTACTG
GVACAGNMTGTYCTB
 A C G T A C G T A C G T A C G T A C G T C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:RAATGTACTG--
--CTGTTCCTGG
 C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0096.1_Zfp187_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RAATGTACTG----
TTATGTACTAATAA
 C T A G G T C A T C G A C G A T A T C G A G C T T G C A G T A C C G A T A T C G A C G T A C G T A C G T A C G T
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A