Information for 8-CAAAAAGTCC (Motif 17)

A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C
Reverse Opposite:
C T A G A C T G C T G A A G T C A C G T G C A T A C G T A C G T C G A T A C T G
p-value:1e-10
log p-value:-2.348e+01
Information Content per bp:1.843
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif112.3
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets54.4 +/- 29.2bp
Average Position of motif in Background50.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAGTCC-----
GGCAAAAGTCCAATAA
 A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CAAAAAGTCC-
--AAAAGTCAA
 A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PB0146.1_Mafk_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAGTCC----
GAAAAAATTGCAAGG
 A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAAAAGTCC-
ACTACAATTCCC
 A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAGTCC-
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAAAAAGTCC--
GVACAGNMTGTYCTB
 A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CAAAAAGTCC
AAAGGTCAAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAAAAAGTCC--
GRACAGWMTGTYCTB
 A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAAAAAGTCC---
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAAAAAGTCC
GAGGTCAAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A G T C A T G C A C G T A C G T A A C T G A G C T A G T C A G T C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A