Information for 7-GCARCCAATCACA (Motif 7)

C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
Reverse Opposite:
C G A T T A C G A C G T A C T G G T C A A C G T A G C T C T A G T A C G A G C T A G C T T A C G G T A C
p-value:1e-14
log p-value:-3.384e+01
Information Content per bp:1.664
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif5.50%
Number of Background Sequences with motif635.5
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets50.1 +/- 25.7bp
Average Position of motif in Background48.2 +/- 35.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GCARCCAATCACA
ACTAGCCAATCA--
 A C G T C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---GCARCCAATCACA
AAATGGACCAATCAG-
 A C G T A C G T A C G T C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GCARCCAATCACA
--AGCCAATCGG-
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GCARCCAATCACA-
----CAAATCACTG
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCARCCAATCACA-----
TGGACCAATCAGCACTCT
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.74
Offset:4
Orientation:forward strand
Alignment:GCARCCAATCACA
----CCAATCAA-
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCARCCAATCACA----
CGACCCAATCAACGGTG
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GCARCCAATCACA--
-----AAATCACTGC
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GCARCCAATCACA---
-----AAATCACAGCA
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCARCCAATCACA
-CCATCAATCAAA
 C A T G A T G C T C G A T C G A A G T C A G T C C T G A T C G A A C G T G T A C T G C A A T G C G C T A
A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A