Information for 5-AGTKTTAWAW (Motif 6)

C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
Reverse Opposite:
C G A T C A G T C G T A G C A T T C G A T G C A G T C A C G T A T G A C C G A T
p-value:1e-9
log p-value:-2.270e+01
Information Content per bp:1.578
Number of Target Sequences with motif129.0
Percentage of Target Sequences with motif15.19%
Number of Background Sequences with motif4061.3
Percentage of Background Sequences with motif8.51%
Average Position of motif in Targets47.9 +/- 28.8bp
Average Position of motif in Background49.7 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGTKTTAWAW
ATTGTTA---
 C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGTKTTAWAW--
TTCAATTGTTCTAAAA
 A C G T A C G T A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGTKTTAWAW--
TAATTGTTCTAAAC
 A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

MF0011.1_HMG_class/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGTKTTAWAW
ATTGTT----
 C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGTKTTAWAW
ATTGTTTAN-
 C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------AGTKTTAWAW
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGTKTTAWAW
CGGTTTCAAA-
 A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----AGTKTTAWAW-
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTKTTAWAW-
AAAATTGTTATGAA
 A C G T A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGTKTTAWAW-
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G C A T C A G T A C G T A G C T C G T A G C A T G T C A G C T A A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A