Information for 3-GCASCTGCTGCTYTTT (Motif 3)

C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
Reverse Opposite:
C G T A G T C A C T G A C T G A C T G A A C T G T A G C G T C A A C T G T G A C C T G A A T C G T A C G A C G T A C T G G A T C
p-value:1e-14
log p-value:-3.363e+01
Information Content per bp:1.692
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets62.1 +/- 22.3bp
Average Position of motif in Background48.5 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCASCTGCTGCTYTTT
CTCAGCAGCTGCTACTG
 A C G T C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCASCTGCTGCTYTTT
--AGCAGCTGCT----
 C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCASCTGCTGCTYTTT
NNAGCAGCTGCT----
 C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCASCTGCTGCTYTTT
-CAGCAGCTGN-----
 C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCASCTGCTGCTYTTT
CCACCTGTTGCAT---
 C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCASCTGCTGCTYTTT
SNGCACCTGCHS------
 A C G T A C G T C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCASCTGCTGCTYTTT
CGCAGCTGCG-------
 A C G T C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCASCTGCTGCTYTTT
----CAGCTGNT----
 C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCASCTGCTGCTYTTT
TGCAGCTGTCCCT----
 A C G T C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCASCTGCTGCTYTTT
ANCCACCTGTTGCNC---
 A C G T A C G T C T A G G T A C G T C A A T G C A T G C G A C T A C T G G T A C A C G T A T C G A G T C G A C T G A C T G A C T C A G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T A C G T A C G T