Information for 11-CTAGTAAAAA (Motif 29)

A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G
p-value:1e-5
log p-value:-1.244e+01
Information Content per bp:1.959
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 28.9bp
Average Position of motif in Background47.4 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAA
GCTCGTAAAAA
 A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CTAGTAAAAA--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CTAGTAAAAA--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAGTAAAAA
CCAATAAAAA
 A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTAGTAAAAA
CCYMATAAAA-
 A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAA
NCYAATAAAA-
 A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CTAGTAAAAA---
AACCCAATAAAATTCG
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAGTAAAAA
GTCGTAAAAA
 A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTAGTAAAAA
CCAATAAAAA
 A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTAGTAAAAA
GGTCGTAAAAA
 A C G T A G T C A C G T C G T A A C T G A C G T C G T A C G T A G T C A C G T A C G T A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A