Information for 12-GHGAGGNCATGGGGAG (Motif 19)

T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A T G C A T G C G A T C A G T C C G T A A C G T A C T G G T A C A G T C A G T C A G C T A G T C C T A G A T G C
p-value:1e-8
log p-value:-1.927e+01
Information Content per bp:1.718
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif49.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets36.9 +/- 17.8bp
Average Position of motif in Background46.0 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1/MA0056.1/Jaspar

Match Rank:1
Score:0.62
Offset:9
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
---------TGGGGA-
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
--GGGGCCCAAGGGGG
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
---AGGTCAAGGTCA-
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
---AGGTCAAGGTCA-
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
CAAAGGTCAAGGG---
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
-TRAGGTCA-------
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG----
---AGGTCACGGAGAGGTCA
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GHGAGGNCATGGGGAG------------
---RGGCAMTAGGGAGCCATRGAAGGTK
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG-----
---RGGTCADNNAGAGGTCAV
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GHGAGGNCATGGGGAG
-AGRGGTCA-------
 T A C G G A T C C T A G C T G A C T A G C T A G A C T G T A G C T G C A C G A T A C T G C A T G A T C G A T C G C G T A A C T G
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T