Information for 1-CACGTGMCYS (Motif 1)

G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
Reverse Opposite:
T A G C T C A G T A C G C A G T A G T C C G T A A G T C A C T G A G C T A C T G
p-value:1e-38
log p-value:-8.770e+01
Information Content per bp:1.676
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif14.18%
Number of Background Sequences with motif1348.2
Percentage of Background Sequences with motif2.81%
Average Position of motif in Targets44.9 +/- 26.5bp
Average Position of motif in Background50.5 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arntl/MA0603.1/Jaspar

Match Rank:1
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGMCYS
NCACGTGACN-
 A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CACGTGMCYS
CACGTGDC--
 G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:CACGTGMCYS
CACGTGNC--
 G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGMCYS
TCACGTGACC-
 A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CACGTGMCYS
KCACGTGMCN-
 A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:6
Score:0.94
Offset:0
Orientation:forward strand
Alignment:CACGTGMCYS
CACGTG----
 G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:7
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CACGTGMCYS
ATCACGTGAC--
 A C G T A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CACGTGMCYS
ACCACGTGCC--
 A C G T A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C A C G T A C G T

TFE3/MA0831.1/Jaspar

Match Rank:9
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CACGTGMCYS
ATCACGTGAC--
 A C G T A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
T C G A A G C T A T G C G C T A A G T C T C A G G C A T A C T G T G C A G A T C A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CACGTGMCYS
NVCACGTG----
 A C G T A C G T G T A C T C G A G T A C A C T G A C G T A C T G G T C A A T G C A G T C A T C G
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T