Information for 16-CGGCCCTAAA (Motif 18)

G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A
Reverse Opposite:
A C G T A C G T A G C T T G C A C T A G A C T G A C T G A G T C A G T C C A T G
p-value:1e-6
log p-value:-1.558e+01
Information Content per bp:1.843
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif115.0
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets43.4 +/- 20.6bp
Average Position of motif in Background55.0 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGGCCCTAAA------
ACGGCCATAAAATTAAT
 A C G T G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGGCCCTAAA---
-NGYCATAAAWCH
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGGCCCTAAA---
-GGCCATAAATCA
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGGCCCTAAA
CTGCCCGCA-
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGGCCCTAAA---
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGGCCCTAAA-
AAGCCATAAAA
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGGCCCTAAA----
AAAGGTAATAAAATTT
 A C G T A C G T G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGGCCCTAAA---
-GGCCATAAATCA
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGGCCCTAAA----
-GGCCATAAATCAC
 G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGCCCTAAA---
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T G T A C A C T G C T A G A G T C A G T C A G T C A C G T C T G A C G T A T C G A A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C