Information for 2-DGGTATTACATTGATC (Motif 3)

C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
Reverse Opposite:
A C T G C G T A C G A T G T A C C G T A C G T A A C G T A C T G A C G T C T G A C G T A A C G T C G T A A T G C G T A C G A C T
p-value:1e-11
log p-value:-2.752e+01
Information Content per bp:1.799
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.4 +/- 36.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0059.1_Six6_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
AATAGGGTATCATATAT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T A C G T A C G T A C G T

PH0162.1_Six2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
AATGGGGTATCACGTTT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:DGGTATTACATTGATC
----ATGACCTTGAA-
 C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
A C G T A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:DGGTATTACATTGATC
---NATGACCTTGA--
 C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
A C G T A C G T A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
AATAGGGTATCAATATT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T A C G T A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
AATAGGGTATCAATTAT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:DGGTATTACATTGATC----
---NNTTCCTTTGATCTNNA
 C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:DGGTATTACATTGATC-
-----TGACCTTGACCT
 C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

PH0161.1_Six1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
GATGGGGTATCATTTTT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T A C G T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----DGGTATTACATTGATC
GATAGGGTATCACTAAT---
 A C G T A C G T A C G T A C G T C G T A A C T G A T C G A C G T C G T A A C G T G A C T G T C A G T A C T G C A A C G T A C G T A C T G C G T A G C A T A G T C
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T A C G T A C G T A C G T