Information for 8-TGTCTGGCTT (Motif 25)

A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
Reverse Opposite:
C G T A C G T A A C T G A G T C A G T C C G T A A C T G C T G A A G T C C G T A
p-value:1e-6
log p-value:-1.531e+01
Information Content per bp:1.939
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif103.0
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets45.1 +/- 27.2bp
Average Position of motif in Background47.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGGCTT--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGTCTGGCTT
GGTCTGGCAT
 A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCTT
CTGTCTGG---
 A C G T A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGGCTT
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCTT
TWGTCTGV---
 A C G T A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTCTGGCTT--
TGTCTGDCACCT
 A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCTT--
CTGTCTGTCACCT
 A C G T A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGTCTGGCTT--
TGATTGGCTANN
 A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGTCTGGCTT
---TTGGCA-
 A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGTCTGGCTT------
-GYCTGGYYTNTGTCA
 A C G T A C T G G A C T A G T C A C G T A C T G A C T G A G T C A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A