Information for 1-ATCAGCCTGCTTTTTC (Motif 1)

G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
Reverse Opposite:
C T A G G T C A C G T A C T G A C T G A C G T A C A T G A G T C C G T A A C T G C A T G G T A C A C G T A T C G G T C A A C G T
p-value:1e-14
log p-value:-3.386e+01
Information Content per bp:1.764
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.6 +/- 13.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATCAGCCTGCTTTTTC
DCTCAGCAGG-------
 A C G T G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:ATCAGCCTGCTTTTTC---
----CCTTGCAATTTTTNN
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ATCAGCCTGCTTTTTC
--CAGCC---------
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ATCAGCCTGCTTTTTC
-ACATCCTGNT-----
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---ATCAGCCTGCTTTTTC
GAGCACAGCAGGACA----
 A C G T A C G T A C G T G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:ATCAGCCTGCTTTTTC
--CCCCCTGCTGTG--
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---ATCAGCCTGCTTTTTC
CCACACAGCAGGAGA----
 A C G T A C G T A C G T G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:8
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-ATCAGCCTGCTTTTTC
GTACATCCGGATTTTT-
 A C G T G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:ATCAGCCTGCTTTTTC-
--AAGTCAGCANTTTTN
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C A C G T
A C G T A C G T C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:ATCAGCCTGCTTTTTC
GTCAGCANNTN-----
 G T C A A C G T A T G C C G T A C A T G G T A C G T A C A C G T A C T G G T A C G C A T G A C T A G C T A C G T C A G T A G T C
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T