Information for 2-TGGGYATTGR (Motif 2)

C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A
Reverse Opposite:
A G C T A G T C C G T A G T C A C A G T T C A G T G A C A T G C G A T C C G T A
p-value:1e-12
log p-value:-2.859e+01
Information Content per bp:1.774
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif32.3
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets50.5 +/- 32.8bp
Average Position of motif in Background53.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGGGYATTGR-
TGTGGATTNNN
 C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGGYATTGR
NGTGGGCAT---
 A C G T A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGGGYATTGR
NNTGTGGATTSS
 A C G T A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGGGYATTGR---
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

GFY(?)/Promoter/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGGYATTGR---
-GGGAATTGTAGT
 C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T
A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGYATTGR-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGGGYATTGR-----
-----ATTGATTYND
 C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGGYATTGR---
NAGGTCANTGACCT
 A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TGGGYATTGR-----
AGAGGGGATTAATTTAT
 A C G T A C G T C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TGGGYATTGR----
--GGGATTGCATNN
 C G A T C T A G A T C G A C T G A G T C G T C A A C G T C G A T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T