Information for 10-CTRAGCAAAGCCT (Motif 19)

A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T
Reverse Opposite:
C G T A C T A G A C T G A G T C A G C T A C G T C G A T A C T G A T G C A G C T A G T C C G T A A C T G
p-value:1e-5
log p-value:-1.219e+01
Information Content per bp:1.833
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif13.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets40.7 +/- 24.4bp
Average Position of motif in Background56.7 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CTRAGCAAAGCCT
-----CNAGGCCT
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CTRAGCAAAGCCT
-----CTAGGCCT
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T
A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTRAGCAAAGCCT-
GGGGCCGAGGCCTG
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTRAGCAAAGCCT
WDNCTGGGCA------
 A C G T A C G T A C G T A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTRAGCAAAGCCT---
-NNGGCCACGCCTTTN
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T A C G T A C G T
A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CTRAGCAAAGCCT
----GCTAATCC-
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T
A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTRAGCAAAGCCT----
-NNGGCGACACCTCNNN
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T A C G T A C G T A C G T
A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTRAGCAAAGCCT----
CTGATCGAAACCAAAGT
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CTRAGCAAAGCCT---
-----CTAATCCTCTT
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CTRAGCAAAGCCT--
-----CAAGGHCANV
 A G T C A C G T C T A G C T G A A T C G A G T C G C T A C G T A C T G A C T A G A G T C A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G