Information for 5-GGCAGCAAAG (Motif 3)

A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
Reverse Opposite:
A T G C C G A T A G C T A G C T C T A G A G T C A C G T A C T G A G T C A G T C
p-value:1e-21
log p-value:-4.844e+01
Information Content per bp:1.858
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif196.9
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets54.1 +/- 24.6bp
Average Position of motif in Background47.4 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGCAAAG
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GGCAGCAAAG--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAAAG
NGAAGC----
 A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAAAG-
GTCAGCANNTN
 A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

PAX5/MA0014.2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCAGCAAAG------
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGCAAAG
TGAGTCAGCA---
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGCAAAG
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCAGCAAAG
--CAGCC---
 A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAAAG
NACAGGAAAT
 A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

Mafb/MA0117.2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGCAAAG-
NGTCAGCANTTT
 A C G T A C T G A C T G G T A C C G T A A C T G A G T C C T G A C T G A C G T A A T C G A C G T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T