Information for 20-RCTSSARGARAGGWTC (Motif 30)

C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
Reverse Opposite:
A C T G C G T A C G T A A T G C A G T C A C G T A G C T A C G T A G T C A G C T A C G T A T C G A T C G C G T A A T C G G A C T
p-value:1e-8
log p-value:-2.031e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 33.9bp
Average Position of motif in Background54.1 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RCTSSARGARAGGWTC--
----GGAGAAAGGTGCGA
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:2
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:RCTSSARGARAGGWTC
TTTCCTGGAAAGNNN-
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:3
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---RCTSSARGARAGGWTC
NGCTTTCTAGGAAN-----
 A C G T A C G T A C G T C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:RCTSSARGARAGGWTC
---GGAACAAAGR---
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---RCTSSARGARAGGWTC
NNNATTCCTCGAAAGN---
 A C G T A C G T A C G T C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:RCTSSARGARAGGWTC
-----AACAAAGG---
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-RCTSSARGARAGGWTC
TACTGGAAAAAAAA---
 A C G T C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:RCTSSARGARAGGWTC
--NACAGGAAAT----
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:9
Score:0.47
Offset:0
Orientation:forward strand
Alignment:RCTSSARGARAGGWTC
TTTCCAGGAAATGG--
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:RCTSSARGARAGGWTC
---AAAACAAAGG---
 C T G A A T G C A C G T A T G C A T G C C G T A C T G A A C T G C G T A C T G A C G T A A C T G A T C G C G A T A C G T G T A C
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T