Information for 11-CAAGCCATTCATT (Motif 13)

G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T
Reverse Opposite:
T G C A C G T A C G A T A C T G C T G A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C T G
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.4 +/- 20.4bp
Average Position of motif in Background48.4 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAAGCCATTCATT
ACTAGCCAATCA--
 A C G T G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAAGCCATTCATT------
---NNCATTCATTCATNNN
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CAAGCCATTCATT-----
----ACATTCATGACACG
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Hoxd8/MA0910.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAAGCCATTCATT-----
-NAGCCATTAATTANTTA
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAAGCCATTCATT-----
-NAGCCATTAATTANTTA
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAAGCCATTCATT----
-AATCAATTCAATAATT
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAAGCCATTCATT
--GGCCATTAAC-
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAAGCCATTCATT-
--RGCCATYAATCA
 G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hmx1/MA0896.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAGCCATTCATT---
ACAAGCAATTAATGAAT
 A C G T G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAAGCCATTCATT---
ACAAGCAATTAATGAAT
 A C G T G T A C C G T A C G T A A C T G A G T C A G T C C G T A A C G T A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T