Information for 8-AGAGGGCATC (Motif 13)

C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
Reverse Opposite:
A T C G G T C A A C G T A C T G A T G C A G T C G T A C A G C T A G T C G C A T
p-value:1e-10
log p-value:-2.307e+01
Information Content per bp:1.836
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif333.1
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets54.7 +/- 29.9bp
Average Position of motif in Background54.2 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCATC
NGTGGGCAT-
 C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGAGGGCATC
TRAGGTCA--
 C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAGGGCATC
AGRGGTCA--
 C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCATC
TNNGGGCAG-
 C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCATC
CAAAGGTCAG-
 A C G T C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCATC
GGTTGGCAT-
 C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCATC--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCATC---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCATC--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCATC---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A A C T G A C T G A T C G A G T C G T C A C A G T T A G C A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C