Information for 3-TGGGCATTCATGC (Motif 4)

A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
Reverse Opposite:
C T A G G T A C C G T A C G A T A C T G C G T A C G T A A C G T A T C G A G T C G T A C A G T C C G T A
p-value:1e-15
log p-value:-3.461e+01
Information Content per bp:1.859
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.1 +/- 28.5bp
Average Position of motif in Background65.5 +/- 0.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGGCATTCATGC----
---ACATTCATGACACG
 A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:2
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGGGCATTCATGC
---RCATTCCWGG
 A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGGCATTCATGC---
GACCACATTCATACAAT
 A C G T A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGGCATTCATGC-----
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

FOXH1/MA0479.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGGCATTCATGC
TGTGGATTNNN--
 A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGGCATTCATGC
NGTGGGCAT------
 A C G T A C G T A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGGGCATTCATGC
NNTGTGGATTSS---
 A C G T A C G T A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGGGCATTCATGC------
--TGCAGTCATGCGTGACG
 A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGGGCATTCATGC
---RCATTCCWGG
 A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGGCATTCATGC--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T C T A G C A T G A C T G A T G C C G T A C G A T A C G T A G T C C G T A A C G T A C T G A G T C A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A