Information for 12-GMAWTATAWTKCA (Motif 16)

A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C
p-value:1e-4
log p-value:-1.091e+01
Information Content per bp:1.870
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.8 +/- 23.8bp
Average Position of motif in Background73.9 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GMAWTATAWTKCA-
NANTATTATAATTNNN
 A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GMAWTATAWTKCA-
TTTAATTATAATTAAG
 A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GMAWTATAWTKCA-
NNTAATTATAATTNNN
 A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GMAWTATAWTKCA-
TAAGATTATAATACGG
 A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GMAWTATAWTKCA
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GMAWTATAWTKCA
-ATGCATAATTCA
 A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GMAWTATAWTKCA
AAAGGTAATAAAATTT-
 A C G T A C G T A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GMAWTATAWTKCA--
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GMAWTATAWTKCA----
--ANATTTTTGCAANTN
 A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0080.1_Tbp_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GMAWTATAWTKCA-
NANTTATATATAANGN
 A C G T A C G T A C T G G T C A C G T A C G A T A C G T C G T A C G A T C G T A C G T A A C G T A C G T A G T C C G T A A C G T
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A