Information for 1-AGGTCACSGTGAC (Motif 1)

C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
Reverse Opposite:
A T C G A C G T G T A C C G T A A T G C T A G C T C A G A C G T C T A G G T C A A T G C G T A C A G C T
p-value:1e-68
log p-value:-1.573e+02
Information Content per bp:1.658
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif11.14%
Number of Background Sequences with motif416.7
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets54.8 +/- 18.5bp
Average Position of motif in Background51.4 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACSGTGAC-
NAGGTCACNNTGACC
 A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:AGGTCACSGTGAC--
AGGTCACCCTGACCT
 C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCACSGTGAC---
CAGGTCACCGTGACCTT
 A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACSGTGAC-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGGTCACSGTGAC
AGGTCA-------
 C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACSGTGAC
TRAGGTCA-------
 A C G T A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACSGTGAC
AGRGGTCA-------
 A C G T A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AGGTCACSGTGAC
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACSGTGAC
AAGGTCAC------
 A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACSGTGAC-
GTAGGTCACTGGGTCA
 A C G T A C G T C T G A C A T G A T C G A C G T G A T C T C G A A G T C A T C G T A C G A C G T A C T G T G C A T A G C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A